Through my PhD I had the wonderful opportunity of traveling to different countries to learn and to show my work. It was a very exciting time and I put all my skills in design to the test. In this post I want to share with you the posters I did and talk a little bit about them.
I do all my posters and figures in Inkscape, Blender and GIMP, all free and open source software for design that have all the same tools as private paid software. I also program a lot of the SVG figures using javascript and D3,
Exploratory analysis and visualization of in-situ sequencing data
TissUUmaps a tool to explore millions of points of in-situ sequencing data directly on top of the tissue. Offline or online, with documentation, you can use the browser console to analyze using javascript or simply use the GUI. Presented in EMBL – Seeing is believing as a lightning talk and in Janelia’s Women in Computational Biology conference in the U.S.
Learning from the interaction of gene expression, protein expression and tissue morphology, to make better decision about cancer treatment
In the group where I worked we are very interested in combining different sources of information and use spatial information to analyze and visualize biological phenomena. Presented at a Deep Learning workshop at the Center for Systems Biology in Dresden.
Quality Assurance and Local Regions for Whole Slide Image Registration
When trying to align WSI it is hard to evaluate and also to find out relevant locations. This poster shows how I approach this problem and gives some fun facts about WSI. I presented it in the European Congress of Digital Pathology.
